Grayling draft genome dataset
收藏资源简介:
###### Description Tthymallus_scaffolds.fasta-Assembled scaffold sequences Tthymallus_RepeatLibrary_deNovo.fasta-De novo repeat library sequences Tthymallus_transcriptome_DeNovo.fasta- De novo transcriptome assembly using Trinity (followed by RSEM based filtering) Tthymallus_transcriptome_ReferenceBased.fasta-Reference-based transcriptome using STAR-Cufflinks-transdecoder pipeline (followed by filtering based on homology to known proteins from zebrafish and stickleback proteins. Tthymallus_ScaffoldAnnotation.gff3-MAKER pipeline based annotation for the scaffolds. Tthymallus_proteins.fasta-Grayling protein sequences used for inferring orthologous groups (based on MAKER annotations) Tthymallus_maker_fullOutput.gff- Full output from MAKER Tthymallus_CPMcounts.txt-Expression counts for grayling OrthologousGroups.txt-Inferred orthologous groups using Orthofinder



