Additional file 4 of FixNCut: single-cell genomics through reversible tissue fixation and dissociation

Additional file 4: Table 3. This table contains differentially expressed (DE) genes for mouse tissue comparisons, considering all cell populations. The comparisons include: 1) fixed versus fresh lung samples, 2) fixed versus fresh colon samples, 3) fixed compared to cryopreserved (cryo), 4) fixed/cryo versus cryo, and 5) fixed/cryo compared with fixed on lung samples. The statistical analysis was performed using Seurat MAST with genes considered DE if they had an FDR adjusted p-value < 0.05 and were present in at least 10% of cells (see Methods). The results include positive Log2FC values indicating higher expression in the first condition mentioned, while negative values indicate higher expression in the second condition mentioned.