Genome-wide chromatin and gene expression profiling during memory formation and maintenance in adult mice. [Data Record 8: DEEs and DEGs]

<b>DESCRIPTION</b><br>This data record contains tables of differentially expressed genes (DEG) and exons (DEE), where each table contains comparisons between the conditions naive and context (N-C) and naive and context-shock (N-CS) for each time point (1h or 4w) and tissue (CA1 or ACC).<br><br><b>TABLES</b><br>DEG tables<br>Columns "ensemblID", "gene_name" and "description" refer to the ENSEMBL ID, gene symbol and gene description, respectively. Columns "chromosome", "start", "end" and "strand" indicate the position of the gene (with strand being "1" for positive strand or "-1" for negative strand). Column "biotype" refers to the type of gene (protein-coding, antisense, non-coding etc.). Finally, column "baseMean" refers to the mean expression of the gene in all samples, column "log2FoldChange" refers to the log2 fold change between the samples in the different conditions, and columns "pvlaue" and "padj" refer to the raw and Benjamini-Hochberg-adjusted p-values, respectively.<br>DEE tables<br>Column "ensemblID" still refers to the ENSEMBL gene ID, but some genes may appear multiple times, as they contain multiple exons, and the column "exonID" indicates the exon number in the gene. Columns “pvalue”, “padj”, “meanBase” and “log2FoldChange” correspond to the same columns in the DEG tables (with the exception of “meanBase”, which is equivalent to “baseMean” in the DEG tables).<br><br><b>DATA GENERATION</b><br>The code used to do differential expression analyses of genes and exons can be found in Figshare (https://dx.doi.org/10.6084/m9.figshare.3146749).<br><br>