Additional file 9 of Transcriptome and proteome profiling reveal complementary scavenger and immune features of rat liver sinusoidal endothelial cells and liver macrophages

Additional file 9. Analysis of microarray expression data obtained from Nolan et al. 2013 [35]. Excel file (.xls) with the comparative analysis of expression data obtained from a microarray profiling study of mouse (Mus musculus) primary microvascular endothelial cells, published by Nolan DJ, Ginsberg M, Israely E, Palikuqi B, Poulos MG, James D, et al. Molecular signatures of tissue-specific microvascular endothelial cell heterogeneity in organ maintenance and regeneration [35]. The microarray data was downloaded from the GEO public database-Series GSE47067. Title of dataset: In vivo endothelial cell heterogeneity. The first worksheet, named “Pairwise_DGE (Nolan_2013)”, shows pairwise analysis of the expression data of endothelial cells from different organs. The second worksheet, named “DAVID_ liver specific genes”, presents the DAVID enrichment analysis [54, 55] output of genes that were consistently significantly abundant in mouse liver sinusoidal endothelial cells (LSECs) in every pairwise comparison of LSECs with other microvascular endothelial cells in the dataset (Significance level: FDR ≤ 0.05, and log2 fold change ≥1).