To facilitate reuse and reproducibility, we provide all 499 simulated datasets generated in this study together with their ground-truth annotations. For each simulation, we release (i) the cell
Combined assembly of 2 Cloacimonetes single cell genomes (NCBI accession numbers: AQRP00000000, ASPM00000000) with an average nucleotide identity above 97%
The samples correspond to the mouse cells from patient-derived xenograft (PDX) originating from two different human donors. The HBCx-22 and HBCx-22-TamR datasets correspond to mouse cells from a pair