Coturnix japonica - VCF reference dataset
收藏DataCite Commons2025-04-26 更新2025-04-16 收录
下载链接：
https://data.inrae.fr/citation?persistentId=doi:10.15454/TKMI53
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资源简介：
A reference VCF file for Coturnix japonica based on 20 public samples. The raw file has been filtered with snpSift filter countVariant>=4 Tools : Fastp : 0.21.0 BWA : 0.7.17-r1188 elprep : 5.1.1 compiled with go1.17 GATK : 4.2.2.0 HTSJDK : 2.24.1 Picard : 2.25.4 SnpEff : 4.3t Genome : http://ftp.ensembl.org/pub/release-105/fasta/coturnix_japonica/dna/Coturnix_japonica.Coturnix_japonica_2.0.dna.toplevel.fa.gz Lot Run AGE Assay Type Bases BioProject BioSample LibrarySelection LibrarySource 1_4 SRR13858145 10 weeks WGS 19180892700 PRJNA706434 SAMN18132322 Quail DNA male 5_12 DRR140491 NA WGS 33671461800 PRJDB7083 SAMD00127316 white eggshell male 5_12 DRR140475 NA WGS 11815478100 PRJDB7083 SAMD00127317 wild type eggshell female 5_12 DRR140476 NA WGS 14138309700 PRJDB7083 SAMD00127318 wild type eggshell female 5_12 DRR140477 NA WGS 15776136600 PRJDB7083 SAMD00127320 white eggshell female 5_12 DRR140474 NA WGS 11019546600 PRJDB7083 SAMD00127323 white eggshell female 13_16 SRR8224502 NA WGS 21936329100 PRJNA506074 SAMN10449646 Lethal Yellow H na 13_16 SRR8224505 NA WGS 15341037300 PRJNA506074 SAMN10449643 Fawn na 17_118 SRR5460177 adult WGS 27996336900 PRJNA339911 SAMN06756391 Coturnix japonica_yellow_male_5 male 17_118 SRR5460180 adult WGS 25659766080 PRJNA339911 SAMN06756393 Coturnix japonica_marron_female_2 female 17_118 SRR5460232 young WGS 24106632300 PRJNA339911 SAMN06756404 Coturnix japonica_yellow_female_8 female 17_118 SRR5460233 young WGS 25431708900 PRJNA339911 SAMN06756419 Coturnix japonica_marron_male_8 male 17_118 SRR6974347 not applicable WGS 25655201100 PRJNA339911 SAMN08892713 eggquail_Egg_117283_M_new male 17_118 SRR6974343 not applicable WGS 29769724800 PRJNA339911 SAMN08892717 eggquail_E_59181_M_new male 17_118 SRR6974334 not applicable WGS 30710747100 PRJNA339911 SAMN08892725 meatquail_1262526_F_new female 17_118 SRR6974327 not applicable WGS 38353153800 PRJNA339911 SAMN08892728 meatquail_1262550_M_new male 17_118 SRR6974352 not applicable WGS 25353056700 PRJNA339911 SAMN08892735 wildquail_1604_F_new female 17_118 SRR6974355 not applicable WGS 25740976800 PRJNA339911 SAMN08892738 wildquail_8601_M_new male 119_120 DRR055129 not applicable WGS 20421975400 PRJDB2313 SAMD00009971 na female 121_127 SRR2162767 15 months WGS 12128137200 PRJNA292031 SAMN03989050 ConsD male 121_127 SRR2162768 15 months WGS 13731757200 PRJNA292031 SAMN03989050 ConsD male
提供机构：
Portail Data INRAE
创建时间：
2022-01-31
