Additional file 1 of Microglial gene signature reveals loss of homeostatic microglia associated with neurodegeneration of Alzheimer’s disease

Additional file 1: Table S1 Assembled multiple supplementary tables containing data for RNA sequencing and clinical and neuropathological data of human subjects. Table S1a. A list of differentially expressed genes in isolated-microglia from AppNL-G-F/NL-G-F mice. Table S1b. A list of differentially expressed genes in isolated-microglia from rTg4510 mice. Table S1c. A list of differentially expressed genes in isolated-microglia from SOD1G93A mice. Table S1d. Changes in homeostatic microglial markers in each mouse model of neurodegenerative disease. Table S1e. Changes in DAM markers in each mouse model of neurodegenerative disease. Table S1f. Clinical and neuropathological data of human subjects. Table S1g. A list of differentially expressed genes in the precuneus of AD brain. Table S1h. A list of differentially expressed genes enriched in neurons in the precuneus of AD brain. Table S1i. Changes in the genes defined as risk factors for AD in the AD precuneus and microglia isolated from AppNL-G-F/NL-G-F and rTg4510 mice. Table S1j. A list of commonly upregulated genes in the precuneus of AD brain and isolated-microglia from AppNL-G-F/NL-G-F mice and/or rTg4510 mice. Table S1k. A list of commonly downregulated genes in the precuneus of AD brain and isolated-microglia from AppNL-G-F/NL-G-F mice and/or rTg4510 mice.