Supplementary Tables for Bifidobacterium Colonization Study

Supplementary Tables for a study of Bifidobacterial colonization success after FMT.

Table S1: Bifidobacteria genomes. a) Accession numbers for Bifidobacteria reference genomes. b) Detection of Bifidobacteria MAGs in FMT metagenomes. c) Sample information and SRA accession numbers for publicly-available gut metagenomes used in this study. d) Detection of Bifidobacteria MAGs in global gut metagenomes. e) Prevalence of Bifidobacteria MAGs in global gut metagenomes. f) gANI percent identity between Bifidobacteria genomes. g) gANI percent alignment coverage between Bifidobacteria genomes.  h) Bifidobacteria reference genomes from NCBI. i) Summary statistics for Bifidobacteria MAGs and reference genomes.

Table S2: Bifidobacteria functional analysis. a) List of KEGG modules that are complete in at least one Bifidobacterium genome. b) KEGG module completeness scores in each Bifidobacterium genome. c) KEGG modules enriched in different Bifidobacteria species. d) KOfam presence and absence in Bifidobacteria genomes. e) KOfams enriched in different Bifidobacteria species. f) COG function presence and absence in Bifidobacteria genomes. g) COG functions enriched in different Bifidobacteria species.