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Bacterial killing assays in ecoimmunology require cross-validation by agreement statistics

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DataCite Commons2026-04-20 更新2026-04-25 收录
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https://datadryad.org/dataset/doi:10.5061/dryad.z8w9ghxtb
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The bacterial killing assay (BKA) is a simple assay that assesses the ability of the constitutive immune system, typically the plasma-based immune system, to clear pathogens in vitro. Historically, this has been accomplished through counting bacterial colonies on solid agar plates (CFU-based), however, over the last 15 years, a technique that makes use of optical density (OD-based) has been steadily gaining in popularity. Although cross-validations have been performed between these two methods in the past, they only compared measurements of growth (colony counts and absorbance) using correlation statistics with plasma. We performed our own method cross-validation using first blood cells (red and white blood cells with plasma removed) and then plasma, and compared measurements of growth and bactericidal ability using both correlation and agreement statistics. Our results found that while there was a weak correlation between colony counts and absorbance at 300nm, we found poor agreement between techniques in the cell-based BKA, with slightly stronger agreement when done with plasma. We believe this is caused by immunological processes, especially in the case of the cell-based BKA, changing the optical properties of the culture.
提供机构:
Dryad
创建时间:
2026-04-20
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