Additional file 7 of LABRAT reveals association of alternative polyadenylation with transcript localization, RNA binding protein expression, transcription speed, and cancer survival

Additional file 7: Table S3. Correlation of expression changes and APA changes in TCGA and ENCODE data. A positive correlation indicates that an increase in gene expression was associated with an increase in ψ. Put another way, a positive correlation indicates that increased gene expression was associated with increased distal polyA site usage, while a negative correlation indicates that increased gene expression was associated with increased proximal polyA site usage. Spearman correlation coefficients were calculated across all sample pairs (tumor and matched control in TCGA data, RBP knockdown and control knockdown in ENCODE data) in which the gene was expressed (TPM > 5). If a gene was not expressed in any sample pair, the correlation is noted as NA.