Additional file 1: of Meta-transcriptomics reveals a diverse antibiotic resistance gene pool in avian microbiomes

Table S1. Libraries and metadata. Table S2. Antibiotic resistance genes observed in bird meta-transcriptomes. Table S3. Confounder tests to account for sequence depth. Table S4. Antibiotic resistance gene burden in ducks from the WWTP and an isolated nature reserve. Table S5. Contribution of the bird microbiome members to the expression of metabolic pathways. Table S6. Random Forest classification based on microbial pathways. Table S7. Comparable libraries from healthy birds that were positive or negative for avian influenza virus (A) and healthy or diseased birds with symptoms of Newcastle disease (B), and their corresponding resistance gene burden. Table S8. Antibiotic resistance genes successfully amplified with PCR. (XLSX 125 kb)