Additional file 1: of RNA-Seq analysis of gene expression changes triggered by Xanthomonas oryzae pv. oryzae in a susceptible rice genotype

Table S1. Summary of RNA-Seq paired-end data produced by Illumina sequencing. Table S2. List of 1143 DEGs expressed at different time points in JG30 genotype after infection of PXO99A and PH strains. The significant DEGs were retrieved by Log2FC ≥1 (up-regulated genes) or ≤ − 1 (down-regulated genes) as a threshold level. The gene ID, FPKM based expression pattern, GO terms, and chromosomal position are mentioned in the table. Table S3. A detailed list of TFs expressed differentially in JG30 genotype at different time points after PXO99A and PH inoculation. Table S4. List of significant enriched different Kinase responsive genes differentially expressed at different time points in JG30 genotype after PXO99A and PH strains. Table S5. A detailed list of differentially expressed peroxidase responsive genes in JG30 genotype after PXO99A and PH inoculations at different time points. Table S6. Significant KEGG pathways (P-value ≤0.05) involved in JG30 genotype after PXO99A and PH infection. Table S7. MapMan analysis of DEGs involved in biotic stress pathway in JG30 genotype. The gene ID, bin code, gene description, and average Log2FC values are presented in the below-mentioned table. Table S8. MapMan analysis of DEGs involved in different metabolic pathways in JG30 genotype. The gene ID, bin code, gene description, and average Log2FC values are presented in the below-mentioned table. Table S9. Summary of GO terms enriched in JG30 genotype after PXO99A and PH infection. Table S10. A list of significantly enriched GO terms (P-value ≤0.05) having DEGs at different time points after infection of PXO99A and PH strains. Table S11. A list of eight genes primers used for RNA-Seq data validation. (XLSX 359 kb)