Additional file 1 of Methylation-directed regulatory networks determine enhancing and silencing of mutation disease driver genes and explain inter-patient expression variation

Additional file 1: Table S1. Driver and reference cancer genes. Table S2. DNase hypersensitivity signals within the targeted chromatin regions. Table S3. Design and sequences of the RNA probes used for the target-enrichment assay. Table S4. Distribution of RNA probes per targeted gene domain. Probes were allocated to all methylation sites within the assigned variable-chromatin blocks. Table S5. Glioblastoma samples. Table S6. Qualities of the libraries of captured DNA segments. Table S7. Functional regulatory elements before and after DNA methylation. Table S8. Inferred regulatory circuits*. Table S9. Methylation-based gene expression models. Table S10. Gene-associated regulatory units. Table S11. Model predictions. Table 12. Reads distribution per probe pre and post metylation.