Large-scale Inference of Cell Lineage Trees and Genotype Calling from Noisy Single-Cell Data Using Efficient Local Search

This repository contains all scripts and datasets used in the paper Large-scale Inference of Cell Lineage Trees and Genotype Calling from Noisy Single-Cell Data Using Efficient Local Search. The materials provided here enable reproducibility and facilitate further exploration of our methods. Github: https://github.com/yufengwudcs/ScisTree2 Included in this archive: Source code and scripts used to run experiments, generate results, and evaluate accuracy metrics. Benchmark datasets and simulated data used in the paper. Instructions and configuration files for reproducing figures and tables. HGSOC