Ongoing shuffling of protein fragments diversifies core viral functions linked to interactions with bacterial hosts

Two code pipelines were used to generate the results:\ phage-protein-modularity-data and phage-protein-modularity-figures. The first pipeline processes NCBI RefSeq data and carries out HMM profile construction, all-by-all HMM comparison and HMM-HMM comparison to PHROGs and ECOD databases. The second pipeline takes the output of the first pipeline as input and generates all outputs and figures presented in the publication. Both pipelines are available under the following Github releases:
1. https://github.com/bioinf-mcb/phage-protein-modularity-data/releases/tag/v1.0
2. https://github.com/bioinf-mcb/phage-protein-modularity-figures
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