Supplemental Data for "Genetic diversity, population structure, and selective sweeps in Corchorus capsularis"

Supplemental Data for the Article: "Genetic diversity, population structure, and selective sweeps in Corchorus capsularis" Supplemental file "Report_DJm24-3044_2_moreOrders_SNP_2.csv." The raw genotypic data used in this study. Supplemental file "Data". Table S1. A panel of 101 Corchorus capsularis accessions from the WorldVeg genebank assembled for genotyping to capture broad genetic diversity. Supplemental file "Data". Table S2. A detailed protocol used for genomic DNA extraction in jute. Supplemental file "Data". Table S3. The final set of 10,056 high-quality SNP markers retained and used for downstream genetic analyses in this study. Supplemental file "Data". Table S4. Results of cross-validation for discriminant analysis of principal components (DAPC) used to determine the optimal number of principal components retained for the genetic structure analysis. Supplemental file "Data". Table S5. Bootstrap support values (proportions) for nodes in the phylogenetic tree. Supplemental file "Data". Table S6. Sliding window summary of SNP numbers and Pi (π) values across three C. capsularis populations. Supplemental file "Data". Table S7. Sliding window summary of SNP numbers and Tajima’s D values across three C. capsularis populations. Supplemental file "Data". Table S8. Sliding window summary of Fst and ROD value across three C. capsularis populations. Supplemental file "Supplementary figures". Figure S1. Cross-entropy plot indicating the optimal number of ancestral populations (K). Supplemental file "Supplementary figures". Figure S2. Confusion matrix of the inferred genetic clusters. Supplemental file "Supplementary figures". Figure S3. Genome-wide comparison of nucleotide diversity (π) ratios among three C. capsularis populations.