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PCA of 23andMe data from openSNP + HapMap

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Figshare2015-06-16 更新2026-04-29 收录
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https://figshare.com/articles/dataset/PCA_of_23andMe_data_from_openSNP_HapMap/1450835
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A simple PCA plot done with ~1400 23andMe data sets found on openSNP + the HapMap data. A list of ~100 Ancestry Informative Markers, from http://www.biomedcentral.com/1471-2156/10/39, was used for the PCA. Data mangling was done using PLINK. PCA was run with smartpca, without any optimizing for outliers. Plotting done with R + ggplot2. HapMap population keys can be found here: https://www.sanger.ac.uk/resources/downloads/human/hapmap3.html
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2015-06-16
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