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Data from: Sequential colonization of oceanic archipelagos led to a species-level radiation in the common chaffinch complex (Aves: Fringilla coelebs)

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DataCite Commons2022-11-21 更新2024-07-28 收录
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https://figshare.com/articles/dataset/Data_from_Sequential_colonization_of_oceanic_archipelagos_led_to_a_species-level_radiation_in_the_common_chaffinch_complex_Aves_Fringilla_coelebs_/13562582
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We include the vcf files used for the different analysis and a file with individuals information:<br><b><br></b><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166</b><br><b><br></b>Complete dataset of 159,534 SNPs after initial filtering.<br><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166_neutral01_LE05</b><br><b><br></b>Dataset of 100,166.166 neutral SNPs from 82 individuals in vcf format. Includes an individual of <i>F.teydea </i>as outgroup (TEN4).Used in RAxML analysis.<br><b><br></b><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166_neutral01_LE05_noTEN4</b><br><br>Dataset of 100.166 neutral SNPs from 81 individuals (excluding the outgroup) in vcf format.<b><br></b><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss095_count166_neutral01_LE05_2indv_outg_SNAPP.</b><br><br>Dataset of 15,836 neutral SNPs, including 19 individuals (2 per population + outgroup) used for SNAPP analysis.<b><br></b><b>PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss095_count166_neutral01_LE05_STRUCTURE</b><br><br>Dataset of 16,416 independent neutral SNPs from 81 samples (no outgroup) in vcf format for STRUCTURE analysis.<br><br><b>MAC_indvs_vcfs</b><b><br></b>Information about the individuals included in the vcfs.<br><br>
提供机构:
figshare
创建时间:
2021-01-13
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