Decoding murine corneal epithelial specification and homeostasis by single-cell spatial transcriptomics with scRNA-seq enrichment

Single Cell datasets and Spatial Transcriptomic Single Cell datasets. Mouse strain: 129S1/SvImJ-Pax6^Sey (MMRRC: 050624-MU). Genotype: wt/wt. Age: 4 months old / 2 months old. Single Cell (denoted in the files as SC) platform: 10x Genomics Chromium. Origin: Mouse cornea tissue. Spatial Transcriptomics (denoted in the files as ST) platform: 10x Genomics Visium HD . Origin: Mouse cornea tissue Integration files (denoted in the files as scVI) include datasets from both above platforms. Spatial locations of cells provided as exported parquet files from geopandas GeoDataframes. Spatial locations correspond to pixel coordinates in the provided corresponding microscopy images.