MDSINE2 Dataset Inference Analysis

MDSINE2 Inference Analysis files. This archive contains: 1) Replicates for negative binomial fitting. 2) Cross-Validation inference with comparator analysis included. For the full project/source pipeline, refer to https://github.com/gerberlab/MDSINE2_Paper. Each ZIP archive has been split due to technical limitations while uploading large files through Zenodo's web API. To download the files, we recommend either our in-house tool (https://github.com/gibsonlab/zenodo_download) or Zenodo's endorsed tool (https://github.com/dvolgyes/zenodo_get). To unzip a multi-part ZIP file, we recommend using 7-zip. For example, to unpack the cross-validation MDSINE2 default runs, do the following from the command line: 7z x mdsine2-modules.zip NOTE: this updated zenodo record does not contain the full inference samples, due to file size limitations. (Version 1 of this upload has invalid tar.xf archives due to an erroneous file transfer). Please refer to https://doi.org/10.5281/zenodo.8208502 for those files.