Additional file 11 of AMEND: active module identification using experimental data and network diffusion

Additional file 11. Consistency Analysis. Sheet 1: Results of consistency analysis, showing the Jaccard Index and the Nested Index for various comparison groups across different module sizes. Sheet 2: List of genes found in common between at least two modules from the BBN mouse data. Sheet 3: ORA was performed on all the modules, excluding the shared genes. This table shows the number of modules each pathway was associated with. The purpose was to assess the biological plausibility of the genes not shared between modules.