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An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster

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DataCite Commons2024-05-31 更新2024-08-18 收录
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https://figshare.com/articles/dataset/An_amplicon_panel_for_high-throughput_and_low-cost_genotyping_of_Pacific_oyster/23646471/1
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<b>Data inputs</b> for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster <i>Crassostrea gigas</i>". Includes:<b>Data from Sutherland et al. 2020</b>, not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink format, single-SNP per locus filtered output from Stacks populations module)- populations.snps.vcf (as above, but VCF format)<b>New data</b>, multilocus genotypes from the pilot study from the present analysis:- R_2022_08_04_S5XL.xls (initial run samples using Cgig_v.1.0 amplicon panel)- R_2022_10_07_S5XL.xls (second run using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot (tab-delim text file interp of populations; note: samples 1601-1608 are cultured samples from China, not wild samples, and this is dealt with in the analysis script)
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figshare
创建时间:
2023-08-22
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