Global Biotic Interactions: Taxon Graph Patches

Global Biotic Interactions: Taxon Graph Patch 20190920-01 2019-09-20 Abstract / Introduction This is an improved version of patch 20190816-01 [1], fixing a minor bug that prevented patching of multiple EOL_V2 ids in the taxonCache file. The patch was generated from GloBI Taxon Graph v0.3.15 [2] and the most recent EOL Dynamic Hierarchy Active Version [3]. Methods Repeating an improved script used in patch 20190816-01 [1], <br> to prevent pointing to no longer present EOL web pages from GloBI, <br> an automated precedure was implemented to do the following: for each of <br> the page ids referenced in the current active version of the EOL <br> Dynamic Taxon Hierarchy, make sure that the GloBI Taxon Graph maps to <br> EOL page id with prefix "EOL:". For EOL pages ids that do *not* appear<br> in the EOL Dynamic Taxon Hierarchy, ensure that that GloBI Taxon Graph maps<br> to EOL page id with prefix "EOL_V2:". To apply the patch, run the "patch" program against the original<br> taxonCache/taxonMap files with the .patch files on any linux-y system. Patch files taxonMap.tsv.patch.gz and taxonCache.tsv.patch.gz were <br> created using: create_patch.sh in period 2019-09-20/2019-09-22 . Result/Discussion The resulting improved patch re-mapped previously assumed deprecated links<br> back to active EOL page ids. Also, assumed active pages were labeled<br> as deprecated by prefixing them with EOL_V2: . References [1] Poelen, Jorrit H. (2019). Global Biotic Interactions: Taxon Graph Patches (Version 0.3) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3371634 [2] Poelen, Jorrit H. (2019). Global Biotic Interactions: Taxon Graph <br> (Version 0.3.15) [Data set]. Zenodo. http://doi.org/10.5281/zenodo.3378125 [3] "EOL Dynamic Hierarchy Active Version",<br> https://editors.eol.org/other_files/DWH/TRAM-809/DH_v1_1.tar.gz<br> with hash://sha256/81d59d2225e61ed76f62daa4d213609fb53f30e42c7c80fbb400723c728eafa2 . Accessed on 2018-08-16 .