CottonGen CottonCyc Pathways Database
收藏agdatacommons.nal.usda.gov2023-12-18 更新2025-01-21 收录
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https://agdatacommons.nal.usda.gov/articles/dataset/CottonGen_CottonCyc_Pathways_Database/24853212/1
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资源简介：
The CottonGen CottonCyc Pathways Database, part of CottonGen, supports searching and browsing the following CottonCyc databases:
Cyc pathways for JGI v2.0 G. raimondii D5 genome assembly
This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the JGI v2.0 D5 genome assembly of Gossypium raimondii. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v2.1 annotations as provided by JGI.
Cyc pathways for CGP-BGI v1.0 G. hirsutum AD1 genome assembly
This Cyc database was constructed using PathwayTools version 20.0 using the gene models from the CGP-BGI v1.0 AD1 genome assembly of Gossypium hirsutum. There has been no manual curation of this Cyc database. Pathway predictions were made using PathwayTools and in-silico v1.0 annotations as provided by CGP-BGI.
Search parameters include genes, proteins, RNAs, compounds, reactions, pathways, growth media, and BLAST search. Resources in this dataset:Resource Title: Website Pointer to CottonGen CottonCyc Pathways Database. File Name: Web Page, url: http://ptools.cottongen.org/
棉基因组计划（CottonGen）的棉Cyc通路数据库，作为CottonGen的组成部分，支持对以下棉Cyc数据库进行搜索和浏览：
针对JGI v2.0 G. raimondii D5基因组组装的Cyc通路
该Cyc数据库采用PathwayTools版本20.0构建，利用了JGI v2.0 D5基因组组装中Gossypium raimondii的基因模型。该Cyc数据库未经人工编辑。通路预测是通过PathwayTools以及JGI提供的v2.1在线注释进行的。
针对CGP-BGI v1.0 G. hirsutum AD1基因组组装的Cyc通路
该Cyc数据库同样采用PathwayTools版本20.0构建，利用了Gossypium hirsutum的CGP-BGI v1.0 AD1基因组组装中的基因模型。该Cyc数据库亦未经过人工编辑。通路预测亦是通过PathwayTools以及CGP-BGI提供的v1.0在线注释实现的。
搜索参数包括基因、蛋白质、RNA、化合物、反应、通路、生长培养基以及BLAST搜索。本数据集包含的资源：资源标题：指向棉基因组计划Cyc通路数据库的网站指针。文件名：网页，URL：http://ptools.cottongen.org/
提供机构：
agdatacommons.nal.usda.gov
