Additional file 1 of Characterization using ultra-deep sequencing of the intra-host distribution of the mutations associated with H. pylori antibiotic resistance

Supplementary Material 1. Supplementary Table 1. Primers sequence. Supplementary Table 2. 23S rRNA gene diversification before filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 3. 23S rRNA gene diversification after filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 4. gyrA gene diversification before filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 5. gyrA gene diversification after filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 6. frxA gene diversification before filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 7. frxA gene diversification after filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 8. rdxA gene diversification before filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modificationss have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 9. rdxA gene diversification after filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 10. Pbp1 gene diversification before filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 11. Pbp1 gene diversification after filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 12. rpoB gene diversification before filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 13. rpoB gene diversification after filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 14. 16S rRNA gene diversification before filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modification have been presented with number of reads and fraction of the respective subpopulation. Supplementary Table 15. 16S rRNA gene diversification after filtering. * ND: not determined; R: Resistant; S: Susceptible; All mutations/modifications have been presented with number of reads and fraction of the respective subpopulation.