Additional file 4: of Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi

Annotation of fungal GalEa retrotransposons. The copy number corresponds to the number of elements returned by LTRharvest. The two most frequent sequences of the CHS (Conserved Hairpin Site) CHSeq1 are given in green and blue, and their different observed derivatives are shown in light blue. Mismatches between the sequences CHSeq1 and CHSeq2 are indicated in red, including the strictly conserved A/A mismatch at the third position of CHSeq2 (in red bold). The Interval corresponds to the distance between the two reverse complementary CHS sequences. The GC content was estimated on all entire sequences of each family. (XLSX 20 kb)