Data for: Combining transcriptomes and ultraconserved elements to illuminate the phylogeny of Apidae

This repository contains the research data associated with the article "Combining transcriptomes and ultraconserved elements to illuminate the phylogeny of Apidae". It includes the trinity assemblies of the de-novo sequenced UCEs, the extracted UCE sequence data from the included genomes and transcriptomes, as well as the concatenated nucleotide matrices with their partition files. We further provide the inferred phylogenetic trees in newick format and detailed supplementary methods.