Allele coverage counts for differentially fixed SNPs
收藏DataONE2017-03-03 更新2024-06-26 收录
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We provide here the Sync file of allele coverage counts for the 4,170 SNPs for six populations of Lasallia pustulata that were differentially fixed between the low (1 to 4) and high-altitude (6) population clusters.
Used populations and abbreviations:
1 => Population 1, 176 m a.s.l.
2 => Population 2, 297 m a.s.l.
3 => Population 3, 588 m a.s.l.
4 => Population 4, 842 m a.s.l.
5 => Population 5, 1,125 m a.s.l.
6 => Population 6, 1,303 m a.s.l.
Output of the Sync file (for format specification see Kofler et al., PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 2011;27:3435-3436):
col1: scaffold number
col2: SNP position on scaffold
col3: reference character
col4: allele frequencies of population number 1
col5: allele frequencies of population number 2
coln: allele frequencies of population number n
The allele frequencies are in the format A:T:C:G:N:del, i.e: count of bases 'A', count of bases 'T', etc. , and deletion count in the end.
创建时间:
2017-03-03



