Replicated radiation of a plant clade along a cloud forest archipelago dataset

Raw data complementary of https://github.com/eaton-lab/Orienotinus-phylogeny repository

Assembly output of Oreinotinus species (Viburnum, Adoxaceae) using ipyrad pipeline and morphological matrix:

List of files:

full_dataset.loci Custom format that shows each individual locus with variable sites indicated.

full_dataset.phy Concatenated RAD loci in Phylip format

full_dataset.seqs.hdf5 Sequences formated as HDF5 file

full_dataset.snps Phylip files that includes only variable sites (SNPs)

full_dataset.snps.hdf5 SNPs formated as HDF5 file

full_dataset.snpsmap Information about location (locus) of SNPs

full_dataset_stats.txt Statistics about the assembly

leaf_traits_measurements.tsv TSV file that contains leaf measurments used in the discriminant analyses.

canopy_data.txt Canopy cover data

central_plateau_data.txt Macroenvironmental data for the Chiapas central plateau

full_distribution.txt Specimen metadata and coordinates for all the points for Oreinotinus distribution

leaf_wetness_temp.txt Climate station data for leaf wetness, temperature

leaf_traits_measurements.tsv TSV file that contains leaf measurments used in the discriminant analyses.

tree_accessions.txt Species-level tree accessions with specimen metadata