Additional file 1 of Transcriptomic and genomic analysis provides new insights in molecular and genetic processes involved in zucchini ZYMV tolerance

Additional file 1: Table S1. Number of short variants (SNV and InDel) identified in TF and 381e. For each C. pepo linkage group (LG) the length, percentage of expressed genes (EGs) and number of normalised variants are reported. Table S2. Number of short variants (SNV and InDel) identified in TF and 381e. For each C. pepo linkage group (LG) the length, percentage of expressed genes (EGs) and number of normalised variants are reported. Table S3. Validation of 6 polymorphic loci located on putative genomic regions introgressed from ‘Menina’. For each amplicon, locus name, primer and polymorphism information are reported. Additional Table 4. Protein function of gene annotation reported by Andolfo et al. [11]. Additional Table 5. Summary of the RNA-Seq data. Number of reads before and after the quality check, mean GC content and sequence length were reported for each biological replicate (BR). Supplementary Table 6. List of differentially expressed receptor-like serine/threonine-protein kinases that were identified and classified in Cucurbita pepo cv. True French by Andolfo et al., (2017). Supplementary Table 7. High confident UP and DOWN regulated genes (Up regulated with LogFC > 1 and Down regulated with LogFC < 1).