Additional file 8: of Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maize

Predicted TF target overlap with ChIP-Seq confirmed binding genes for KN1, FEA4 and O2. The leaf, root, SAM and seed refer to our tissue GRNs. “Protein” and “RNA” refer to protein GRN and RNA GRN from Walley et al. (2016) dataset. “Large network” used top 10 million edges in KN1, FEA4 and O2 networks. “Medium network” used top 1 million edges, while “Small network” used top 100,000 edges. “Atlas GRN medium” used top 1 million edges from Walley et al. (2016) dataset while “Atlas GRN small” used top 100,000 edges. (XLSX 13 kb)