Additional file 3 of Genome structure variation analyses of peach reveal population dynamics and a 1.67 Mb causal inversion for fruit shape

Additional file 3: Supplementary Tables S8–S9, S13, S15–S23. This file contains the supplementary tables referenced in the main text. Table S8. Information about Lovell and Rui You Pan1 (RYP1). Table S9. Specific PAVs for the RYP1 and Lovell v2.0 genomes. Table S13. Basic information and statistics of 186 re-sequenced peach accessions (including 149 P. persica and 37 P. kansuensis) used in this study. Table S15. PCR validation of randomly selected SVs. Table S16. Enriched gene ontology (GO) terms with coding or upstream (< 1 kb) regions (putative promoters) affected by SVs. Table S17. The SVs occurred in gene cluster of receptor-like protein kinase gene LRK10 in the three consecutive SV hotspots. Table S18. Highly divergent SVs during peach improvement. Table S19. SNPs significantly associated with flat fruit shape. Table S20. InDels significantly associated with flat fruit shape. Table S21. SVs significantly associated with flat fruit shape. Table S22. Summary information for SNPs of 126 accessions identified in this study with genotyped SNPs from customized SNP genotyping array. Table S23. PCR or qRT-PCR primers used in this study.