Supporting data for Robledo-Ruiz et al. (2023)

Supporting data for manuscript:Robledo-Ruiz D. A., Austin L., Amos J. N., Castrejón-Figueroa J., Magrath M. J. L., Sunnucks P. &amp; Pavlova A. (2023) <b>Easy-to-use R functions to separate reduced-representation genomic datasets into sex-linked and autosomal loci, and conduct sex-assignment. </b>Molecular Ecology Resources. https://doi.org/10.1111/1755-0998.13844<br>Data usage:The three directories have the datasets and scripts for the eastern yellow robin (EYR), yellow-tufted honeyeater (YTH) and Leadbeater's possum (LBP), respectively.<br><b>*_Results.Rmd</b>R script to process outputs from 'standard regime' and 'removing sex-linked loci' regime.<br><b>filtering_regime_using_filter.sex.linked</b>Folder with the script and input data required for 'Removing sex-linked loci' filtering regime.<br><b>filtering_regime_notusing_filter.sex.linked</b>Folder with the script and input data required for 'Standard' filtering regime.<br><b>filter.sex.linked_requirements</b>Folder with the script and input data required to replicate the analyses that investigated the minimum requirements for functions <i>filter.sex.linked</i> and <i>infer.sex</i><br><b>filter.sex.linked_validation</b>Folder with the script and input data required to replicate the analyses that validated the results of function <i>filter.sex.linked</i>