Additional file 2: Figure S1. of Whole genome sequencing reveals within-host genetic changes in paired meningococcal carriage isolates from Ethiopia

Bayesian analysis of population structure (BAPS) clusters of paired meningococcal carriage isolates per sequence type. Neighbor-net splits trees of allelic differences in N. meningitidis core genome MLST genes (N. meningitidis cgMLST v1.0, available at pubMLST.org). Panel A, B, C and D show sequence types (ST) ST-11, ST-53, ST-192 and ST-2880, respectively. BAPS clusters are highlighted by circles and numbered sequentially. Paired isolates from the same individual that have been assigned to different BAPS clusters are underlined and connected with dashed lines. (ZIP 56 kb)