Additional file 15 of Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

Additional file 15:Genes differentially expressed between ES and PES internodes of alfalfa genotype 708.A table listing 3,838 genes differentially expressed between ES and PES internodes of alfalfa genotype 708 in MSGI 1.0. We used a MA-plot-based method with random sampling model in a DEGSeq program to select these genes (p-value < 0.001, FDR < 0.025, ≥ 2-fold difference). RPKM-normalized expression counts, log ratios, z-scores, p-values, and q-values for each gene selected are also presented in the table. (TXT 250 KB)