Opening the door to the past: accessing phylogenetic, pathogen, and population data from museum curated bees

Tens of thousands of insects are deposited in collections every year as a result of survey-based studies that aim to investigate ecological questions. DNA-based techniques can expand the utility of these collections to explore their demographic and evolutionary history, temporal changes in their abundance, and pathogen dynamics. Using museum collections of the non-model bee species Eucera (Peponapis) pruinosa Say 1837 (Hymenoptera: Apidae: Eucerini), we developed a standard minimally-destructive and budget-friendly protocol to extract DNA and amplify common gene-fragments for barcoding, phylogenetic analysis, and pathogens. We also generated genome-wide single nucleotide polymorphism (SNP) data from DNA sequencing (ddRADseq) libraries for population structure analyses. We systematically studied the effect of specimen age (≤10 years ago) and tissue type (whole bees vs. abdomen) on DNA quality, single gene-fragment amplification, and SNP calling. We found that all analyses were achievable...