Additional file 8 of A global phylogenomic and metabolic reconstruction of the large intestine bacterial community of domesticated cattle

Additional file 8: Table S8. Overview of the comparisons between groups of samples to identify differentially represented (DifRep) metabolic features. The four sheets present comparisons for the dairy cow samples coming from Theix (our study) separated in winter (Theix-winter) and summer samples (Theix-summer); and for the calf samples coming from the Salaheen et al. [31] study, separated into samples from animals fed exclusively milk (Salaheen-milk) and samples from calves that after the introduction of solid feed in their diets (Salaheen-solid). For each tab, from left to right, we present the metabolic pathway id; the pathway description; the number of enzymes of that pathway that were identified in the focal contigs. The rest of the columns present the number of predicted enzymes discovered in group-specific (winter-specific, summer-specific, solid-specific or milk-specific) MAGs identified by our analysis (i.e. MAGs that had >25% -for summer or solid group- or >10% -for milk or winter group- of their contigs DifRep; see also Results).