Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse liver (jrc_mus-liver-2)
收藏DataCite Commons2025-02-14 更新2025-04-16 收录
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https://janelia.figshare.com/articles/dataset/Refined_automatic_nuclei_segmentations_in_near-isotropic_reconstructed_volume_electron_microscopy_FIB-SEM_of_mouse_liver_jrc_mus-liver-2_/26506537/1
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资源简介：
<br><b>Segmentation description</b>: Nuclei segmentations in jrc_mus-liver-2 using Cellpose 3.0.9 with cursory manual corrections.<b>Software</b>: Cellpose 3.0.9<b>Software DOI</b>: https://doi.org/10.1038/s41592-022-01663-4<b>Prediction Duration (seconds)</b>: 601.97<b>GPU</b>: NVIDIA TITAN RTX<b>RAM</b>: 251.0 GiB<b>Label voxel size (nm)</b>: 128 x 128 x 128 (x, y, z)<b>Reconstructed data dimensions (µm)</b>: 82.208, 92.088, 101.704 (X, Y, Z)<b>Classes annotated</b>: Nucleus<b>Source dataset (EM) ID</b>: jrc_mus-liver-2<b>Source dataset (EM) voxel size (nm)</b>: 8.0 x 8.0 x 8.0 (X, Y, Z)<b>Source dataset (EM) data dimensions (µm)</b>: 82.208, 92.088, 101.704 (X, Y, Z)<b>Source dataset (EM) DOI</b>: https://doi.org/10.25378/janelia.23411426<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_mus-liver-2/jrc_mus-liver-2.zarr/recon-1/labels/inference/segmentations/nuc/<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_mus-liver-2
提供机构：
Janelia Research Campus
创建时间：
2025-02-14
