five

Distance models

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Figshare2024-11-22 更新2026-04-08 收录
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https://figshare.com/articles/dataset/Distance_models/25858495/1
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This folder contains:the plant-insect interactions recorded for the three time points of April (1), June (2) and August (3) 2016, from which we calculated the Horn-Morisita niche dissimilarity indices.the insect virus normalized read numbers matrices between our focal 5 bee species (<i>Apis mellifera</i>, <i>Bombus </i><i>terrestris</i>, <i>Bombus lapidarius</i>, <i>Bombus hortorum</i> and <i>Bombus pascuorum</i>), from which we calculated the virome dissimilarity indices for the three time points. VirINS files for insect viruses, number 1 for April, 2 for June, 3 for August.the plant virus normalized read numbers matrices between our focal 5 bee species (<i>Apis mellifera</i>, <i>Bombus </i><i>terrestris</i>, <i>Bombus lapidarius</i>, <i>Bombus hortorum</i> and <i>Bombus pascuorum</i>), from which we calculated the virome dissimilarity indices for the three time points. VirPLANT files for insect viruses, number 1 for April, 2 for June, 3 for August.the mitochondrial gene COI sequence alignment for the 5 bee species.the R script used to test the effect of host ecological niche dissimilarity (Horn-Morisita), the host phylogenetic distance (using DNADist method to calculate the nucleotide distance between aligned sequences) and phenology (time points) on virome dissimilarity.<br>
提供机构:
Doublet, Vincent
创建时间:
2024-11-22
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