Analysis of gene copy number-independent changes in RNA abundance.

Index. Detailed information on samples and analyses presented in the table. a Sheet in S5 Table. All RNAnorm LP ogvs EPlog. RNA normalized abundance determined for EP.1 and LP.1 log parasites for all genes. b Sheet in S5 Table. RNAsig_RNAnorm_LPlogvs EPlog. RNA normalized abundance determined for EP.1 and LP.1 log parasites for genes whose RNA read counts were associated with adj p-value < 0.01). c Sheet in S5 Table. All_RNA&DNA_LPstatvs EPstat. RNA normalized abundance determined for EP.1 and LP.1 stat parasites for all genes. d Sheet in S5 Table. Gene dosage dependent. List of genes for which the ratio of normalized RNA read counts / normalized DNA read counts # 1. e Sheet in S5 Table. Gene dosage independent. List of genes for which the ratio of normalized RNA read counts / normalized DNA read counts is <0.8 or >1.2. f Sheet in S5 Table. RNAnormCoverChr5_LPlog-EPlog. RNA normalized coverage determined between EP.1 log and LP.1 log for the chromosome 5. g Sheet in S5 Table. RNAnormCoverChr26_LPlog-EPlog. RNA normalized coverage determined between EP.1 log and LP.1 log for the chromosome 26. h Sheet in S5 Table. RNAnormCoverChr36_LPlog-EPlog. RNA normalized coverage determined between EP.1 log and LP.1 log for the chromosome 36. i Sheet in S5 Table. GO_RNA norm Abundance_BP. GO term enrichment analyses for the category biological process. j Sheet in S5 Table. Categories. List of gene dosage independent genes manually assigned to a category.
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