Additional file 4: of On-treatment biomarkers can improve prediction of response to neoadjuvant chemotherapy in breast cancer

Table S1. Gene lists of pairwise analysis of pre- and on-treatment sequential patient-matched samples from NEO and I-SPY datasets using Significance analysis of microarrays with FDR = 10%. Table S2. Gene lists distinguishing between responders and non-responders at different time points across the NEO and ISPY datasets using rank product analysis with p < 0.05, p < 0.01, and p < 0.001. Pre-treatment (TP), 2 weeks (T2), mid-chemo (TM), and surgery (TS). Table S3. Gene lists distinguishing between responders and non-responders at different time points across the NEO and I-SPY datasets using significance analysis of microarrays with FDR = 10%, FDR = 5%, and FDR = 1%. Pre-treatment (TP), 2 weeks (T2), mid-chemo (TM), and surgery (TS). (XLSX 1184 kb)