Seed development

This Arabidopsis seed development pathway network in GPML format was projected using the reference rice seed development network [[Pathway:WP2199]] and the Arabidopsis to rice gene homology data sets. The green colored nodes (genes) represent where the Inparanoid-based gene homology was positively predicted based on the cutoffs used. The tool used for making the projection was [http://jaiswallab.cgrb.oregonstate.edu/software/PGS Pathway GeneSWAPPER]. Method is described in the publication [http://www.thericejournal.com/content/6/1/14/ Hanumappa et al. (2013)]. This method creates a new projection, but preserves the interactions between nodes.

本拟南芥种子发育通路网络以 GPML 格式呈现，通过参考水稻种子发育网络（通路：WP2199）及拟南芥与水稻基因同源性数据集进行映射。绿色节点（基因）表示基于所采用的阈值，基于 Inparanoid 的基因同源性预测为阳性。用于构建映射的工具为 [http://jaiswallab.cgrb.oregonstate.edu/software/PGS Pathway GeneSWAPPER]。相关方法已在文献 [http://www.thericejournal.com/content/6/1/14/ Hanumappa et al. (2013)] 中进行描述。此方法创建了一种新的映射，但保留了节点间的相互作用。