Additional file 1 of Complete representation of a tapeworm genome reveals chromosomes capped by centromeres, necessitating a dual role in segregation and protection

Additional file 1: Table S1. Chromosome summary. Table S2. Comparison of one-to-one orthologues between assemblies and other flatworms. Table S3. Gene model annotations and Echinococcus multilocularis orthologues. Table S4. Paralogous expansions within orthologue groups predicted using successive H. microstoma genome assembly versions. Table S5. Assessment of genome completeness based on presence/absence of conserved eukaryotic genes. Table S6. Presence and absence of BUSCO orthologues (v. 3.0.2) missing in ≥ one flatworm. Table S7.1. Differentially expressed gene models in Larvae vs. Whole Adult RNA-seq samples ranked by log2-fold change. Table S7.2. Differentially expressed gene models in Scolex-Neck vs. Mid RNA-seq samples ranked by log2-fold change. Table S7.3. Differentially expressed gene models in Scolex-Neck vs. End RNA-seq samples ranked by log2-fold change. Table S7.4. Differentially expressed gene models in Mid vs. End RNA-seq samples ranked by log2-fold change. Table S7.5. Intersect of gene models up-regulated in the Scolex-Neck cf. Mid and End. Table S7.6. Intersect of gene models up-regulated in the Mid cf. Scolex-Neck and End. Table S7.7. Intersect of gene models up-regulated in the End cf. Mid and Scolex-Neck. Table S8. Repetitive elements summary. Table S9. Repetitive element hotspots. Table S10. Micro-exon genes. Table S11. Trans-spliced genes. Table S11.1. Genomic organisation of spliced leader genes. Table S12. Chromosome fusions between H. microstoma and E. multilocularis.