five

DeepDoublet identifies neighboring cell dependent gene expression

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Figshare2024-10-13 更新2026-04-08 收录
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https://figshare.com/articles/dataset/DeepDoublet_identifies_neighboring_cell_dependent_gene_expression/27217101/1
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资源简介:
ADoub_new.zip contains ADoub.npy and ADoub_meta.csvADoub.csv has the UMI counts of 8000 genes of 400,000 artificial doublets.ADoub_meta.csv has the meta information of the 400,000 artificial doublets.The meta file has four columns:| Column | Description ||---------|--------------------------------------------------|| `s1` | Index of the first single cell || `MF_s1` | Proportion of the first single cell (`s1`) || `s2` | Index of the second single cell || `MF_s2` | Proportion of the second single cell (`s2`) |How to load the data?ADoub_meta = pd.read_csv('ADoub_meta.csv')<br>X = np.load('ADoub.csv')<br>Trained modelsDecomp_hep_LEC_1.h5 is the model to decompose the doublets to hepatocytes.Decomp_hep_LEC_2.h5 is the model to decompose the doublets to LECs (liver endothelial cells).
提供机构:
Liao, Linbu
创建时间:
2024-10-13
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