Data from: Whole genome sequence accuracy is improved by replication in a population of mutagenized sorghum.

Supplemental File S1Standard filtered SNPs detected in each of the 586 sorghum individuals.Supplemental_File-S1.zipSupplemental File S2Probable error-prone SNP genomic positions in the sorghum reference genome (version 2.1).Supplemental_File-S2.zipSupplemental File S3Non-replicate and likely EMS-induced homozygous SNPs in each of the 586 sorghum individuals.Supplemental_File-S3.zipSupplemental File S4Non-replicate, and likely EMS-induced heterozygous SNPs in each of the 586 sorghum individuals.Supplemental_File-S4.zipSupplemental File S5Counts of homozygous and heterozygous SNPs in all the 586 sequenced lines.Supplemental_File-S5.zipSupplemental File S6Replicate and likely false-negative EMS-induced homozygous G:C to A:T SNPs in each of the 586 sorghum individuals.Supplemental_File-S6.zipSupplemental File S7Replicate and likely false-negative EMS-induced heterozygous G:C to A:T SNPs in each of the 586 sorghum individuals.Supplemental_File-S7.zipSupplemental File S8SnpEff functional classification of the homozygous EMS-induced SNPs in all the 586 sorghum individuals.Supplemental_File-S8.zipSupplemental File S9Function description for the genes containing the SnpEff-annotated homozygous EMS-induced SNPs in all the 586 sorghum individuals.Supplemental_File-S9.zipSupplemental File S10List of SnpEff-annotated EMS-induced SNPs predicted to trigger silent stop codon lost substitutions in genes of the 586 sorghum individuals.Supplemental_File-S10.zipSupplemental File S11SnpEff functional classification of the heterozygous EMS-induced SNPs in all the 586 sorghum individuals.Supplemental_File-S11.zipSupplemental File S12Function description for the genes containing the SnpEff-annotated heterozygous EMS-induced SNPs in all the 586 sorghum individuals.Supplemental_File-S12.zipSupplemental File S13Function description for the genes containing the SnpEff-annotated tentative false-negative homozygous EMS-induced SNPs in all the 586 sorghum individuals.Supplemental_File-S13.zipSupplemental File S14Function description for the genes containing the SnpEff-annotated tentative false-negative heterozygous EMS-induced SNPs in all the 586 sorghum individuals.Supplemental_File-S14.zipSupplemental File S15SnpEff functional classification of the likely EMS-induced indels in all the 586 sorghum individuals.Supplemental_File-S15.zipSupplemental File S16Function description for the genes containing the SnpEff-annotated likely EMS-induced indels in all the 586 sorghum individuals.Supplemental_File-S16.zipSupplemental File S17SIFT prediction results for the missense-annotated homozygous EMS-induced SNPs in all the 586 sequenced individuals.Supplemental_File-S17.zipSupplemental File S18SIFT prediction results for the missense-annotated heterozygous EMS-induced SNPs in all the 586 sequenced individuals.Supplemental_File-S18.zipSupplemental File S19Summary statistics for the sequencing, mapping, variants prediction, filtering, annotation and classification for the detected EMS-induced variants in all 586 sequenced individuals.Supplemental_File-S19.zipSupplemental File S20Detailed classification, gene function description and annotation of the medium or high impact homozygous EMS-induced SNPs.Supplemental_File-S20.zipSupplemental File S21Detailed classification, gene function description and annotation of the medium or high impact heterozygous EMS-induced SNPs.Supplemental_File-S21.zipSupplemental File S22Detailed classification, gene function description and annotation of the medium or high impact EMS-induced indels.Supplemental_File-S22.zipSupplemental File S23The detailed attributes of gene transcripts, including number of SNPs, GC-content, sequence length, mononucleotide and dinucleotide counts, which were used in the linear correlation analysis.Supplemental_File-S23.zipSupplemental File S24The subset of BLAST ungapped global alignments for the 51nt sequence contexts of the error-prone SNP positions, randomly selected EMS-induced SNP positions and randomly selected genome positions.Supplemental_File-S24.zipSupplemental File S25Sample scripts for the variants detection and annotation pipeline.Supplemental_File-S25.zip