Types of KoRV polymorphisms detected across 6 museum specimens of koalas.
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LTRs are the long terminal repeats, sequence length is from the KoRV reference sequence AF151794. Private polymorphisms were those detected in one koala, shared polymorphisms in more than one koala; NA is not applicable. Radical changes are atypical amino acid substitutions with negative scores in both BLOSUM62 and BLOSUM90 matrices. Radical mutations in env (boldface) were more common (p = 0.040) than in gag-pol, relative to other amino acid changes.
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2015-12-02
