enrichment_cellcount.tab
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资源简介:
Chromatin enrichment: Poisson regression, using selected sites as response, expected values (number of sites with that chromatin annotation in the dataset) as offset.
Enriched/Depleted when CI 95% of the log enrichment does not include 0.
Chromatin states from Epigenomic Roadmap sample E30 lifted to T2T/CMH13v2.
Test different IQR thresholds (0.10 to 0.35), increasing by 0.01 at each step.
Testing on interactions effects from INLA complete model with cell composition corrections (Hrel50).
Columns:
- IQR_threshold: IQR treshold used
- state: chromatin state
- enrichment: exp of mean value to transform to ratio
- mean: log enrichment
- 0.025quant: 95% CI lower bound
- 0.975quant: 95% CI upper bound
- enriched: boolean, TRUE 95% CI > 0
- depleted: boolean, TRUE 95% CI < 0
- status: enriched/depleted
提供机构:
UNIMI Dataverse
创建时间:
2026-03-19



