Additional file 1 of Antagonistic effects of selection on alleles associated with seed size and seed dormancy in wheat

Additional file 1: Table S1–S29. This file contains all supplementary tables. Table S1 Summary of the 545 worldwide wheat accessions. Table S2 Seed dormancy and seed size traits of the 545 wheat accessions. Table S3 Statistical analysis of seed dormancy and seed size of 545 wheat accessions across environments. Table S4 Detailed information of all significantly associated SNPs for the GP3D traits (−log10 [P-value] >5). Table S5 Detailed information of all significantly associated SNPs for the GP7D traits (−log10 [P-value] >5). Table S6 Detailed information of all significantly associated SNPs for the TKW traits (−log10 [P-value] >5). Table S7 Detailed information of all significantly associated SNPs for the KL traits (−log10 [P-value] >5). Table S8 Detailed information of all significantly associated SNPs for the KW traits (−log10 [P-value] >5). Table S9 Summary of associated genomic regions information for seed dormancy and seed size traits by GWAS. Table S10 Haplotype analysis of candidate genes TaPP2C-4A, TaGATA54, TaPdxB-4A and TaRBP-4A in each of wheat accessions. Table S11 Selection signatures and sweeps detected between landraces and cultivars. Table S12 Genes in selection signatures and sweeps detected between landraces and cultivars. Table S13 Percentage of changed FAF for seed dormancy and seed size between cultivars and landraces. Table S14 The number of favorable alleles for seed dormancy and seed size in each of wheat accessions. Table S15 The associated genomic regions of seed dormancy or seed size overlapped with known loci of seed size or seed dormancy. Table S16 The number of favorable alleles of known seed dormancy genes for each of wheat accessions. Table S17 The number of favorable alleles of known seed size genes for each of wheat accessions. Table S18 Frequency of synergistic alleles, antagonistic alleles and independent alleles in wheat. Table S19 Phenotypic variation explained by synergistic alleles, antagonistic alleles and independent alleles for MTA SNPs in wheat. Table S20 Haplotype analysis of 66 overlapping regions for the result of seed dormancy and seed size by GWAS. Table S21 Bidirectional significance analysis of 66 overlapping regions for seed dormancy and seed size traits. Table S22 Detail information of 66 overlapping regions. Table S23 The SNP allele of different wheat populations base on CAPS marker for TaRBP-4A. Table S24 The climate data of 545 wheat accessions in this study. Table S25 The future Bio12 data of cultivar wheat accessions from China and North America. Table S26 The experimental design of growing wheats. Table S27 Differentially expressed genes between dormant seeds and dormancy-released seeds at different imbibition stage in wheat Darius. Table S28 The primer sequence for gene marker in this study. Table S29 Detailed information about acronyms in this study.