INTERPROSCAN results: PCA and discriminant analysis
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https://figshare.com/articles/dataset/INTERPROSCAN_results_PCA_and_discriminant_analysis/5464423/1
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results of Interproscan functional classification of the the ERP016024 dataset (as part of the EBI Metagenomics pipeline [Mitchell et al., Nucl. Acid Res. 2016] v3.0) were analysed using PCA and linear discriminant analysis.<br>"ERP016024_IPR_abundances_v3.0_PCA_subsistencestrategy_ populations.pdf":biplots of PCA based on InterPro functional terms relative abundance, showing the distribution of samples by groups of subsistence strategy (HG: hunter-gatheres, TF: traditional farmers, WC: Western controls) or populations (Aeta, Agta, Batak, Zambal, Casigurani, Tagbanua, Western controls) along the 6 first PC axis.<br><br>"ERP016024_IPR_abundances_v3.0.tsv_LDA_*vs*":tables summarize the results of a LDA with one discriminant function, i.e. separating pair of groups (HG vs TF, TF vs WC, WC vs HG). The top-ranking discriminating functional terms are reported.<br><br>Scripts used to analyse these results can be found on GitHub: https://github.com/flass/microbiomes/tree/master/scripts/interproThis work was published in the journal Molecular Ecology doi: 10.1111/mec.1443
提供机构：
Lassalle, Florent
创建时间：
2017-10-30
