scanpy/anndata files for Tabula Microcebus

We provide the cell by gene count data for the Tabula Microcebus mouse lemur scRNAseq cell atlas in Python’s h5ad and Matlab’s mat formats, as well as scripts to export the files to R’s Seurat format. Datasets are organized as described in https://tabula-microcebus.ds.czbiohub.org/. Datasets can also be explored and reannotated interactively using the cellxgene browser on the same web link.LCA_complete_wRaw_toPublish.h5ad contains the entire atlas integrated using the FIRM algorithm (https://www.biorxiv.org/content/10.1101/2020.06.02.129031v2), while the other h5ad objects are individual tissues.

本数据集提供Tabula Microcebus小鼠狐猴scRNAseq细胞图谱的细胞按基因计数数据，以Python的h5ad格式和Matlab的mat格式提供，并附带了将文件导出为R的Seurat格式的脚本。数据集的组织结构详见https://tabula-microcebus.ds.czbiohub.org/。用户可通过同一网页链接上的cellxgene浏览器进行交互式探索和重新注释。LCA_complete_wRaw_toPublish.h5ad文件包含使用FIRM算法（https://www.biorxiv.org/content/10.1101/2020.06.02.129031v2）整合的整个图谱，而其他h5ad对象则代表单个组织。